Micro-Manager TIFF data conversion

Install NeuroConv with the additional dependencies necessary for reading Micro-Manager TIFF data.

pip install "neuroconv[micromanagertiff]"

Convert Micro-Manager TIFF imaging data to NWB using MicroManagerTiffImagingInterface.

>>> from zoneinfo import ZoneInfo
>>> from neuroconv.datainterfaces import MicroManagerTiffImagingInterface
>>>
>>> # The 'folder_path' is the path to the folder containing the OME-TIF image files and the 'DisplaySettings.json' file with the Micro-Manager properties.
>>> folder_path = OPHYS_DATA_PATH / "imaging_datasets" / "MicroManagerTif" / "TS12_20220407_20hz_noteasy_1"
>>> interface = MicroManagerTiffImagingInterface(folder_path=folder_path, verbose=False)
>>>
>>> metadata = interface.get_metadata()
>>> # For data provenance we can add the time zone information to the conversion if missing
>>> session_start_time = metadata["NWBFile"]["session_start_time"]
>>> if session_start_time.tzinfo is None:
...     tzinfo = ZoneInfo("US/Pacific")
...     metadata["NWBFile"].update(session_start_time=session_start_time.replace(tzinfo=tzinfo))
>>>
>>> # Choose a path for saving the nwb file and run the conversion
>>> nwbfile_path = f"{path_to_save_nwbfile}"
>>> interface.run_conversion(nwbfile_path=nwbfile_path, metadata=metadata)