CNMFE
-----

Install NeuroConv with the additional dependencies necessary for reading CNMF-E data.

.. code-block:: bash

    pip install "neuroconv[cnmfe]"

Convert CNMFE segmentation data to NWB using :py:class:`~neuroconv.datainterfaces.ophys.cnmfe.cnmfedatainterface.CnmfeSegmentationInterface`.

.. code-block:: python


    >>> from datetime import datetime
    >>> from zoneinfo import ZoneInfo
    >>> from pathlib import Path
    >>> from neuroconv.datainterfaces import CnmfeSegmentationInterface
    >>>
    >>> file_path = OPHYS_DATA_PATH / "segmentation_datasets" / "cnmfe" / "2014_04_01_p203_m19_check01_cnmfeAnalysis.mat"
    >>> interface = CnmfeSegmentationInterface(file_path=file_path, verbose=False)
    >>>
    >>> metadata = interface.get_metadata()
    >>> # For data provenance we add the time zone information to the conversion
    >>> session_start_time = datetime(2020, 1, 1, 12, 30, 0, tzinfo=ZoneInfo("US/Pacific"))
    >>> metadata["NWBFile"].update(session_start_time=session_start_time)
    >>>
    >>> # Choose a path for saving the nwb file and run the conversion
    >>> nwbfile_path = f"{path_to_save_nwbfile}"
    >>> interface.run_conversion(nwbfile_path=nwbfile_path, metadata=metadata)